Get started

To use bio-parser in your own environment, you need to install manually.

As a dependency

To install bio-parser as a dependency, you need to first add the following line to your requirements.txt file:

bio-parser @ git+ssh://git@gitlab.teklia.com/ner/metrics/bio-parser.git

Then you can install it via pip:

pip install -r requirements.txt

Manually

To install bio-parser manually, you need to first clone via:

git clone git@gitlab.teklia.com:ner/metrics/bio-parser.git

Then you can install it via pip:

pip install .

To learn more about the newly installed bio-parser command, make sure to run:

bio-parser --help

Get started with: